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Biological database
List of databases for oncogenomic research
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    List of databases for oncogenomic research

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    Databases for oncogenomic research are biological databases dedicated to cancer data and oncogenomic research. They can be a primary source of cancer data, offer a certain level of analysis (processed data) or even offer online data mining.

    List

    The table below gives an overview of databases for that serve specifically for oncogenomic research. Note that this is not a comprehensive list and does not contain databases that have a generic focus. You may find databases containing cancer data among the List of biological databases or Microarray databases.

    Database Institute / Organization Alteration Types Primary Source Processed Data Organisms Cell lines Public Data Restricted Data
    The BioExpress® Oncology Suite from Ocimum Bio Solutions contains gene expression data from primary, metastatic, and benign tumor samples, and normal samples, including matched adjacent controls. (BioExpress Oncology Suite) → Ocimum Bio Solutions, United States Gene Expression Yes Yes Human, Rat and Mouse Yes No Yes
    ClinicalTrials.gov contains descriptions and some results from clinical trials, many of which are genomically targeted. → National Institutes of Health, United States Various Yes Yes Human No Yes No
    Project Data Sphere from The CEO Life Sciences Consortium allows researchers to share, integrate, and analyze de-identified patient-level, comparator arm, phase III cancer data. → The CEO Life Sciences Consortium, United States Various No Yes Human No Yes Yes
    Catalogue Of Somatic Mutations In Cancer (COSMIC) → Wellcome Trust Sanger Institute, UK Mutation No Yes Human Yes Yes Yes
    cBio Cancer Genomics Portal → Memorial Sloan-Kettering Cancer Center, United States Copy number, Mutation, Methylation, Gene Expression, miRNA Expression, Protein, Phosphorylation No Yes Human No Yes No
    International Cancer Genome Consortium → Worldwide Mutation Yes Yes Human No Yes Yes
    Integrative Oncogenomics Cancer Browser (IntOGen) → Universitat Pompeu Fabra, Spain Copy number, Mutation, Gene Expression No Yes Human No Yes No
    Mouse Retrovirus Tagged Cancer Gene Database → Institute of Molecular and Cell Biology, Singapore Mutations Yes Yes Mouse No Yes No
    Mouse Tumor Biology Database → The Jackson Laboratory, United States Copy number, Mutation, Methylation, Gene Expression No No Mouse No No No
    OncoDB.HCC → Academia Sinica, Taiwan Copy number, Gene Expression, QTL No Yes Human, Mouse, Rat No Yes No
    Genevestigator → contains data from numerous public repositories including GEO and renowned cancer research projects as TCGA. Nebion AG, Switzerland Gene Expression No Yes Human, Mouse, Rat, Monkey, Dog and others Yes Yes Yes
    OncoLand from Omicsoft Corporation contains data from large-scale Genomic projects, include TCGA, ICGC and others] Omicsoft Corporation, United States Copy number, Mutation, Methylation, Gene Expression, miRNA Expression, Protein, Phosphorylation Yes Yes Human, Rat and Mouse Yes Yes Yes
    Oncomine → Compendia Bioscience, Inc., United States Gene Expression No Yes Human Yes No Yes
    Oncoreveal → Boğaziçi University, Turkey Gene Expression No Yes Human No Yes No
    Progenetix → Universität Zürich, Switzerland Copy number No Yes Human Yes Yes No
    The Cancer Genome Atlas → National Cancer Institute, United States Copy number, Mutation, Methylation, Gene Expression, miRNA expression Yes Yes Human No Yes Yes
    CancerResource → University Medicine Berlin, Germany
    Roche Cancer Genome Database (RCGDB) [1] Roche Diagnostics, Penzberg, Germany
    Network of Cancer Genes → King's College London, UK Mutation No Yes Human No Yes No
    MutaGene NCBI, NIH, USA Mutation No Yes Human No Yes No

    See also

    External links


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