Liquid biopsy
| Liquid biopsy | |
|---|---|
| Synonyms | Fluid biopsy |
| Purpose | analysis of non-solid biological tissue |
A liquid biopsy, also known as fluid biopsy or fluid phase biopsy, is the sampling and analysis of non-solid biological tissue, primarily blood. Like traditional biopsy, this type of technique is mainly used as a diagnostic and monitoring tool for diseases such as cancer, with the added benefit of being largely non-invasive. Liquid biopsies may also be used to validate the efficiency of a cancer treatment drug by taking multiple samples in the span of a few weeks. The technology may also prove beneficial for patients after treatment to monitor relapse.
The clinical implementation of liquid biopsies is not yet widespread but is becoming standard of care in some areas.
Types
There are several types of liquid biopsy methods; method selection depends on the condition that is being studied.
| Disease | Tissue sampled | Sampling procedure | Invasiveness | Substance isolated | Isolation and detection method | Analysis | Refs |
|---|---|---|---|---|---|---|---|
| Cancer (various) | Blood | Phlebotomy | Minimally invasive | Circulating tumor cells (CTCs) | Various (e.g. CellSearch, RosetteStep, Dynabeads) | Flow cytometry, nucleic acid extraction, immunocytochemistry, functional assays | |
| Cancer (various) | Blood | Phlebotomy | Minimally invasive | Circulating tumor DNA (ctDNA) | DNA extraction | Next-generation sequencing | |
| Urothelial carcinoma | Urine | Urine collection | Non-invasive | Urinary tumor DNA (utDNA) | DNA extraction | Next-generation sequencing | |
| Non-urological cancers | Urine | Urine collection | Non-invasive | Urine proteins, metabolites | HPLC-MS | Proteomics, metabolomics | |
| Heart attack | Blood | Phlebotomy | Minimally invasive | Circulating endothelial cells (CECs) | Various (e.g. CellSearch, HD-CEC) | Flow cytometry | |
| Neurological diseases | Cerebrospinal fluid | Lumbar puncture | Invasive | CSF proteins, nucleic acids | Various | ELISA, multiplex assay, next-generation sequencing | |
| Prenatal diagnosis | Blood (maternal) | Phlebotomy | Minimally invasive | Cell-free fetal DNA (cffDNA) | DNA extraction | Karyotyping, fluorescent in situ hybridization | |
| Prenatal diagnosis | Blood (maternal) | Phlebotomy | Minimally invasive | Fetal cells in maternal blood (FCMB) | Flow cytometry | Karyotyping, fluorescent in situ hybridization | |
| Prenatal diagnosis | Blood (umbilical cord) | Cordocentesis | Invasive | Umbilical blood cells and molecules | Various | Karyotyping, blood typing, blood tests, Kleihauer–Betke test, flow cytometry | |
| Prenatal diagnosis | Amniotic fluid | Amniocentesis | Invasive | Amniotic fluid cells and molecules | Various | Karyotyping, blood typing, L/S ratio, S/A ratio |
A wide variety of biomarkers may be studied to detect or monitor other diseases. For example, isolation of protoporphyrin IX from blood samples can be used as a diagnostic tool for atherosclerosis. Cancer biomarkers in the blood include PSA (prostate cancer), CA19-9 (pancreatic cancer) and CA-125 (ovarian cancer).
Mechanism
Circulating tumor DNA (ctDNA) refers to DNA released by cancerous cells into the blood stream. Cancer mutations in ctDNA mirror those found in traditional tumor biopsies, which allows them to be used as molecular biomarkers to track the disease. Scientists can purify and then analyze ctDNA using next-generation sequencing (NGS) or PCR-based methods such as digital PCR. NGS-based methods provide a comprehensive view of a cancer’s genetic makeup and is especially useful in diagnosis while digital PCR offers a more targeted approach especially well-suited for detecting minimal residual disease and for monitoring treatment response and disease progression. Recent progress in epigenetics has expanded the use of liquid biopsy for the detection of early-stage cancers, including by approaches such as Cancer Likelihood in Plasma (CLiP) .
Liquid biopsies can detect changes in tumor burden months or years before conventional imaging tests can, making them suitable for early tumor detection, monitoring, and detection of resistance mutations. The increase in the adoption of NGS in various research fields, advancement in NGS, and increase in the adoption of personalized medicine are expected to drive growth in the global liquid biopsy market.
Clinical application
The CellSearch method for enumeration of circulating tumor cells in metastatic breast, metastatic colon, and metastatic prostate cancer has been validated and approved by the FDA as a useful prognostic method.
Liquid biopsy for analysis of ctDNA for EGFR-mutated lung cancer is approved by the FDA.