PhenomicDB
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PhenomicDB is a free phenotype oriented database. It contains data for some of the main model organisms such as Homo sapiens, Mus musculus, Drosophila melanogaster, and others. PhenomicDB merges and structures phenotypic data from various public sources: WormBase, FlyBase, NCBI Gene, MGI, and ZFIN using clustering algorithms. The website is currently offline.
Further reading
- Groth P, Kalev I, Kirov I, Traikov B, Leser U, Weiss B (August 2010). "Phenoclustering: online mining of cross-species phenotypes". Bioinformatics. 26 (15): 1924–5. doi:10.1093/bioinformatics/btq311. PMC 2905556. PMID 20562418.
- Groth P, Pavlova N, Kalev I, Tonov S, Georgiev G, Pohlenz HD, Weiss B (January 2007). "PhenomicDB: a new cross-species genotype/phenotype resource". Nucleic Acids Research. 35 (Database issue): D696–9. doi:10.1093/nar/gkl662. PMC 1781118. PMID 16982638.
- Kahraman A, Avramov A, Nashev LG, Popov D, Ternes R, Pohlenz HD, Weiss B (February 2005). "PhenomicDB: a multi-species genotype/phenotype database for comparative phenomics". Bioinformatics. 21 (3): 418–20. doi:10.1093/bioinformatics/bti010. PMID 15374875.
- Groth, Philip; Weiss, Bertram (2006). "Phenotype Data: A Neglected Resource in Biomedical Research?". Current Bioinformatics. 1 (3): 347–358. CiteSeerX 10.1.1.327.800. doi:10.2174/157489306777828008.
- Groth, Philip; Weiss, Bertram; Pohlenz, Hans-Dieter; Leser, Ulf (2008). "Mining phenotypes for gene function prediction". BMC Bioinformatics. 9: 136. doi:10.1186/1471-2105-9-136. PMC 2311305. PMID 18315868.