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Sorting nexin
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Sorting nexin

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PX domain
PDB 1h6h EBI.jpg
Structure of the PX domain from p40(phox) bound to phosphatidylinositol 3-phosphate.
Identifiers
Symbol PX
Pfam PF00787
InterPro IPR001683
SMART PX
PROSITE PDOC50195
SCOP2 1h6h / SCOPe / SUPFAM
OPM superfamily 57
OPM protein 4on3
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary
Sorting nexin, N-terminal domain
Identifiers
Symbol Sorting_nexin
Pfam PF03700
InterPro IPR005329
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary
Vps5 C terminal like (BAR domain)
Identifiers
Symbol Vps5
Pfam PF09325
InterPro IPR015404
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary
Sorting nexin, C terminal domain
Identifiers
Symbol Nexin_C
Pfam PF08628
InterPro IPR013937
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary
WASP-binding domain of Sorting nexin protein
Identifiers
Symbol BAR3-WASP
Pfam PF10456
Available protein structures:
Pfam   structures / ECOD  
PDB RCSB PDB; PDBe; PDBj
PDBsum structure summary

Sorting nexins are a large group of proteins that are localized in the cytoplasm and have the potential for membrane association either through their lipid-binding PX domain (a phospholipid-binding motif) or through protein–protein interactions with membrane-associated protein complexes Some members of this family have been shown to facilitate protein sorting.

Family members

In humans, sorting nexins are transcribed from the following genes:

Genes Domain Composition
N-terminus Mid-1 Mid-2 Mid-3 C-terminus
SNX1, SNX2 Sorting_nexin_N PX BAR (Vps5)
SNX4, SNX7, SNX8, SNX30 PX BAR (Vsp5)
SNX5, SNX6, SNX32 PX BAR
SNX9, SNX18, SNX33 SH3 PX BAR (BAR_3_WASP_bdg)
SNX13, SNX14, SNX19, SNX25 PXA RGS PX Nexin_C
SNX15 PX MIT
SNX17, SNX31 PX RA FERM_M
SNX23 kinesin_motor SMAD_FHA PX
SNX26 PX SH3 RhoGAP
SNX27 PDZ PX - FERM_M
SNX28 PX SH3 SH3
SNX3, SNX10, SNX11, SNX12, SNX16, SNX20, SNX21, SNX22, SNX24, SNX29 PX

Structure

Sorting nexins either consist solely of a PX domain (e.g. SNX3) or have a modular structure made up of the PX and additional domains.

A subgroup of sorting nexins (comprising, in humans, SNX1, SNX2, SNX4, SNX5, SNX6, SNX7, SNX8, SNX9, SNX18, SNX30, SNX32 and SNX33) possess a BAR domain at their C-terminus. (The BAR domain of SNXs 1, 2, 4, 7, 8 and 30 is classified by pfam as 'Vps5 C terminal like'.)

An example of a sorting nexin domain structure can be seen here for SNX1:

  1. NTD – N-terminal domain
  2. PX domain
  3. CTD – C-terminal BAR domain
Schematic diagram of the 1D structures of a representative sorting nexin, the sorting nexin 1 (SNX1). NTD = N-terminal SNX domain, PX = PX domain, CTD = C-terminal BAR domain.

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