Мы используем файлы cookie.
Продолжая использовать сайт, вы даете свое согласие на работу с этими файлами.
Biology-related lists
List of sequenced bacterial genomes
Другие языки:

List of sequenced bacterial genomes

Подписчиков: 0, рейтинг: 0

This list of sequenced eubacterial genomes contains most of the eubacteria known to have publicly available complete genome sequences. Most of these sequences have been placed in the International Nucleotide Sequence Database Collaboration, a public database which can be searched on the web. A few of the listed genomes may not be in the INSDC database, but in other public databases.

Genomes listed as "Unpublished" are in a database, but not in the peer-reviewed scientific literature.

For the genomes of archaea see list of sequenced archaeal genomes.


Abditibacteriota

Species Strain Type Base Pairs Genes Reference GenBank Identifier
Abditibacterium utsteinense LMG 29911 Abditibacteriota 3,606,330 3,240 2018 NZ_NIGF00000000.1

Actinomycetota

Species Strain Type Base Pairs Genes Reference GenBank Identifier
Corynebacterium diphtheriae C7 (beta) Actinobacteridae 2,499,189 Unpublished CP003210
Corynebacterium diphtheriae PW8 Actinobacteridae 2,530,683 Unpublished CP003216
Bifidobacterium longum NCC2705 Actinobacteria 2,256,640 1,727 2002
Corynebacterium diphtheriae NCTC13129 Actinobacteria 2,488,635 2,320 2003
Corynebacterium efficiens YS314 Actinobacteria 3,147,090 2,942 2003
Corynebacterium glutamicum ATCC13032 Actinobacteria 3,309,401 3,099 Unpublished
Corynebacterium jeikeium K411 Actinobacteria 2,462,499 2,104 2005
Frankia species CcI3 Actinobacteria 5,433,628 4,499 Unpublished
Mycobacterium avium k10 Actinobacteria 4,829,781 4,350 2005
Mycobacterium bovis AF212297 Actinobacteria 4,345,492 3,953 2003
Mycobacterium leprae TN Actinobacteria 3,268,203 2,720 2001
Mycobacterium tuberculosis CDC1551 Actinobacteria 4,403,837 4,189 Unpublished
Mycobacterium tuberculosis H37Rv Actinobacteria 4,411,532 3,999 1998
Nocardia farcinica IFM10152 Actinobacteria 6,021,225 5,683 2004
Streptomyces avermitilis MA4680 Actinobacteria 9,025,608 7,577 2001
Streptomyces coelicolor A3 Actinobacteria 8,667,507 7,825 1996
Symbiobacterium thermophilum Strain Actinobacteria 3,566,135 3,337 2004
Thermobifida fusca YX Actinobacteria 3,642,249 3,110 Unpublished

Aquificota

Species Strain Type Base Pairs Genes Reference GenBank Identifier
Aquifex aeolicus VF5 Aquificae 1,551,335 1,522 1998 Chromosome NC_000918

Plasmid ece1 NC_001880

Armatimonadota

Bacteroidota/Chlorobiota group

Species Strain Type Base Pairs Genes Reference GenBank Identifier
Bacteroides fragilis NCTC9343 Bacteroidota 5,205,140 4,260 2005 Chromosome CR626927

Plasmid pBF9343 CR626928

Bacteroides fragilis YCH46 Bacteroidota 5,277,274 4,578 2004 Chromosome AP006841

Plasmid pBFY46 AP006842

Bacteroides thetaiotaomicron VPI-5482 Bacteroidota 6,260,361 4,778 2003 Chromosome AE015928

Plasmid p5482 AY171301

Candidatus Amoebophilus asiaticus 5a2 Bacteroidota 1,884,364 2010 CP001102
Chlorobaculum parvum NCIB 8327 Chlorobiota 2,289,249 DOE Joint Genome Institute CP001099
Chlorobium chlorochromatii CaD3 Chlorobiota 2,572,079 2,002 DOE Joint Genome Institute CP000108
Chlorobium ferrooxidans DSM 13031 Chlorobiota DOE Joint Genome Institute AASE00000000
Chlorobium limicola DSM 245 Chlorobiota 2,763,181 DOE Joint Genome Institute NC_010803
Chlorobium phaeobacteroides BS1 Chlorobiota 2,736,403 DOE Joint Genome Institute NC_010831
Chlorobium phaeobacteroides DSM 266 Chlorobiota 3,133,902 DOE Joint Genome Institute NC_008639
Chlorobium phaeovibrioides DSM 265 Chlorobiota 1,966,858 DOE Joint Genome Institute NC_009337
Chlorobium tepidum TLS Chlorobiota 2,154,946 2,255 2002 AE006470
Chloroherpeton thalassium ATCC 35110 Chlorobiota 3,293,456 DOE Joint Genome Institute CP001100
Cytophaga hutchinsonii ATCC 33406 Chlorobiota 4,433,218 2007 CP000383
Haliscomenobacter hydrossis DSM 1100 Bacteroidota 8,371,686 2011 Chromosome CP002691

Plasmid pHALHY01 CP002692
Plasmid pHALHY02 CP002693
Plasmid pHALHY03 CP002694

Ignavibacterium album JCM 16511 Ignavibacteriota 3,658,997 University of Copenhagen CP003418
Pelodictyon luteolum (Chlorobium luteolum) DSM 273 Chlorobiota 2,364,842 2,083 DOE Joint Genome Institute CP000096
Pelodictyon phaeoclathratiforme BU-1 Chlorobiota 3,018,238 DOE Joint Genome Institute CP001110
Porphyromonas gingivalis ATCC 33277 Bacteroidota 2,354,886 2008 NC_010729
Porphyromonas gingivalis W83 Bacteroidota 2,343,476 1,909 2003 NC_002950
Prosthecochloris aestuarii DSM 271 Chlorobiota 2,512,923 DOE Joint Genome Institute Chromosome CP001108

Plasmid pPAES01 CP001109

Salinibacter ruber DSM 13855 Bacteroidota 3,551,823 2,801 NC_007677
Salinibacter ruber M8 Bacteroidota 3,619,447 Chromosome FP565814

Plasmid pSR11 FP565810
Plasmid pSR56 FP565811
Plasmid pSR61 FP565812
Plasmid pSR84 NC_014157

Saprospira grandis str. Lewin Bacteroidota 4,345,237 University of Hawaii at Manoa Chromosome CP002831

Plasmid CP002832

Caldisericota

Chlamydiota/Verrucomicrobiota group

Species Strain Type Base Pairs Genes Reference
Akkermansia muciniphila ATCC BAA-835 Verrucomicrobiota 2,664,102 2,176
Akkermansia muciniphila Urmite Verrucomicrobiota 2,664,714 2,192
Chlamydia muridarum Nigg Chlamydiota 1,072,950 904
Chlamydia trachomatis AHAR13 Chlamydiota 1,044,459 911
Chlamydia trachomatis DUW Chlamydiota 1,042,519 894
Chlamydophila abortus S26-3 Chlamydiota 1,144,377 961
Chlamydophila caviae GPIC Chlamydiota 1,173,390 998
Chlamydophila felis FeC56 Chlamydiota 1,166,239 1,005
Chlamydophila pneumoniae AR39 Chlamydiota 1,229,853 1,110
Chlamydophila pneumoniae CWL029 Chlamydiota 1,230,230 1,052
Chlamydophila pneumoniae J138 Chlamydiota 1,226,565 1,069
Chlamydophila pneumoniae TW183 Chlamydiota 1,225,935 1,113 ALTANA Pharma
Parachlamy diaspecies UWE25 Chlamydiota 2,414,465 2,031

Chloroflexota

Species Strain Type Base Pairs Genes Reference
Dehalococcoides mccartyi 195 Dehalococcoidetes 1,469,720 1,580
Dehalococcoides mccartyi CBDB1 Dehalococcoidetes 1,395,502 1,458
Dehalococcoides mccartyi DCMB5 Dehalococcoidetes 1,431,902 1,526
Dehalococcoides mccartyi BTF08 Dehalococcoidetes 1,452,335 1,580

Chrysiogenota

Cyanobacteria

Species Strain Type Base Pairs Genes Reference
Anabaena nostoc PCC7120 Nostocales 6,413,771 5,368
Anabaena variabilis ATCC29413 Nostocales 6,365,727 5,039 DOE Joint Genome Institute
Cyanobacteria bacterium YellowstoneA Chroococcales 2,932,766 2,760
Cyanobacteria bacterium YellowstoneB Chroococcales 3,046,682 2,862
Gloeobacter violaceus PCC7421 Gloeobacteria 4,659,019 4,430
Prochlorococcus marinus MED4 Prochlorales 1,657,990 1,716
Prochlorococcus marinus MIT9312 Prochlorales 1,709,204 1,809 Unpublished
Prochlorococcus marinus MIT9313 Prochlorales 2,410,873 2,273
Prochlorococcus marinus NATL2A Prochlorales 1,842,899 1,890 Unpublished
Prochlorococcus marinus SS120 Prochlorales 1,751,080 1,882
Synechococcus elongatus PCC6301 Chroococcales 2,696,255 2,525 Unpublished
Synechococcus elongatus PCC7942 Chroococcales 2,695,903 2,611 Unpublished
Synechococcus species WH8102 Chroococcales 2,434,428 2,526
Synechococcus species CC9605 Chroococcales 2,510,659 2,638 Unpublished
Synechococcus species CC9902 Chroococcales 2,234,828 2,304 Unpublished
Synechocystis species PCC6803 Chroococcales 3,573,470 3,167
Thermosynechococcus elongatus bp1 Chroococcales 2,593,857 2,475 Unpublished

Deferribacterota

Species Strain Type Base Pairs Genes Reference
Geovibrio sp. Deferribacterota 2,971,658 2,415 DOE Joint Genome Institute
Mucispirillum schaedleri ASF457 Deferribacterota 2,319,180 2,144 Broad Institute
Denitrovibrio acetiphilus DSM 12809 Deferribacterota 3,222,077 3,068
Calditerrivibrio nitroreducens DSM 19672 Deferribacterota 2,157,835 2,117
Deferribacter desulfuricans SSM1 Deferribacterota 2,234,389 2,184
Flexistipes sinusarabici DSM 4947 Deferribacterota 2,526,590 2,397

Deinococcota

Species Strain Type Base Pairs Genes Reference GenBank Identifier
Deinococcus deserti VCD115 Deinococcales 2,819,842 Chromosome NC_012526

Plasmid 1 NC_012528
Plasmid 2 NC_012529
Plasmid 3 NC_012528

Deinococcus geothermalis DSM 11300 Deinococcales 2,467,205 2,335 DOE Joint Genome Institute Chromosome CP000359

Plasmid pDGEO01 CP000358
Plasmid pDGEO02 CP000856
Deinococcus gobiensis I-0 Deinococcales 3,137,147 Chromosome CP002191

Plasmid P1 CP002192
Plasmid P2 CP002193
Plasmid P3 CP002194
Plasmid P4 CP002195
Plasmid P5 CP002196
Plasmid P6 CP002197

Deinococcus maricopensis DSM 21211 Deinococcales 3,498,530 US DOE Joint Genome Institute CP002454
Deinococcus proteolyticus MRP Deinococcales 2,147,060 US DOE Joint Genome Institute Chromosome CP002536

Plasmid pDEIPR01 CP002537
Plasmid pDEIPR02 CP002538
Plasmid pDEIPR03 CP002539
Plasmid pDEIPR04 CP002540

Deinococcus radiodurans R1 Deinococcales Chromosome 1: 2,648,638

Chromosome 2: 412,348

Chromosome 1: 2,579

Chromosome 2: 357

Chromosome 1 NC_001263

Chromosome 2 NC_001264
Plasmid CP1 NC_000959
Plasmid MP1 NC_000958

Marinithermus hydrothermalis DSM 14884 Thermales 2,269,167 DOE Joint Genome Institute CP002630
Meiothermus ruber DSM 1279 Thermales 3,097,457 DOE Joint Genome Institute CP001743
Meiothermus silvanus DSM 9946 Thermales 3,249,394 Chromosome CP002042

Plasmid pMESIL01 CP002043
Plasmid pMESIL02 CP002044

Oceanithermus profundus DSM 14977 Thermales 2,303,940 DOE Joint Genome Institute Chromosome CP002361

Plasmid pOCEPR01

Thermus scotoductus SA-01 Thermales 2,346,803 Chromosome CP001962

Plasmid pTSC8 CP001963

Thermus species CCB_US3_UF1 Thermales 2,243,772 Universiti Sains Malaysia Chromosome CP003126

Plasmid pTCCB09 CP003127

Thermus thermophilus HB27 Thermales 1,894,877 1,982 Chromosome AE017221

Plasmid pTT27 AE017222

Thermus thermophilus HB8 Thermales 1,849,742 1,973 Nara Institute of Science and Technology Chromosome NC_006461

Plasmid pTT27 NC_006462
Plasmid pTT8 NC_006463

Thermus thermophilus JL-18 Thermales 1,902,595 DOE Joint Genome Institute Chromosome CP003252

Plasmid pTTJL1801 CP003253
Plasmid pTTJL1802 CP003254

Thermus thermophilus SG0.5JP17-16 Thermales 1,863,201 DOE Joint Genome Institute Chromosome CP002777

Plasmid pTHTHE1601 CP002778

Truepera radiovictrix DSM 17093 Deinococcales 3,260,398 DOE Joint Genome Institute CP002049

Dictyoglomota

Elusimicrobiota

Fibrobacterota/Acidobacteriota group

Species Strain Type Base Pairs Genes Reference
Acidobacteria bacterium Ellin345 Acidobacteriota 5,650,368 4,777 Unpublished
Leifsonia xyli CTCB07 Acidobacteriota 2,584,158 2,030
Propionibacterium acnes KPA171202 Acidobacteriota 2,560,265 2,297
Rubrobacter xylanophilus DSM9941 Acidobacteriota 3,225,748 3,140 DOE Joint Genome Institute
Tropheryma whippelii TW08/27 Acidobacteriota 925,938 784
Tropheryma whippelii Twist Acidobacteriota 927,303 808

Bacillota

Species Strain Type Base Pairs Genes Reference
Bacillus anthracis Ames Bacilli 5,227,293 5,311
Bacillus anthracis Sterne Bacilli 5,228,663 5,287 Unpublished
Bacillus cereus ATCC10987 Bacilli 5,224,283 5,603
Bacillus cereus ATCC14579 Bacilli 5,411,809 5,234
Bacillus cereus ZK Bacilli 5,300,915 5,134 Unpublished
Bacillus clausii KSMK16 Bacilli 4,303,871 4,108
Bacillus halodurans C125 Bacilli 4,202,352 4,066
Bacillus licheniformis ATCC14580 Bacilli 4,222,334 4,152
Bacillus licheniformis Unspecified Bacilli 4,222,645 4,196
Bacillus licheniformis DSM13 Bacilli 4,222,645 4,196
Bacillus subtilis 168 Bacilli 4,214,630 4,106
Bacillus thuringiensis 9727 Bacilli 5,237,682 5,117
Carboxydothermus hydrogenoformans Z2901 Clostridia 2,401,520 2,620
Clostridium acetobutylicum ATCC824 Clostridia 3,940,880 3,672
Clostridium difficile QCD-32g58 Clostridia 3,840,681 Unpublished
Clostridium perfringens 13 Clostridia 3,031,430 2,660
Clostridium tetani E88 Clostridia 2,799,251 2,373
Desulfitobacterium hafniense Y51 Clostridia 5,727,534 5,060
Enterococcus faecalis V583 Bacilli 3,218,031 3,113
Geobacillus kaustophilus HTA426 Bacilli 3,544,776 3,498
Lactobacillus acetotolerans NCFM Bacilli
Lactobacillus acidophilus NCFM Bacilli 1,993,564 1,864
Lactobacillus delbrueckii bulgaricus Bacilli 1,864,998 2,096 Unpublished
Lactobacillus johnsonii NCC533 Bacilli 1,992,676 1,821
Lactobacillus plantarum WCFS1 Bacilli 3,308,274 3,051
Lactobacillus sakei 23K Bacilli 1,884,661 1,885 Unpublished
Lactobacillus sakei sakei23K Bacilli 1,884,661 1,885 Unpublished
Lactobacillus salivarius UCC118 Bacilli 1,827,111 1,717 Unpublished
Lactococcus lactis IL1403 Bacilli 2,365,589 2,266
Listeria innocua Clip11262 Bacilli 3,011,208 2,981
Listeria monocytogenes EGD Bacilli 2,944,528 2,855
Listeria monocytogenes 4b Bacilli 2,905,187 2,821
Moorella thermoacetica ATCC39073 Clostridia 2,628,784 2,465 Unpublished
Oceanobacillus iheyensis HTE831 Bacilli 3,630,528 3,496
Staphylococcus aureus COL Bacilli 2,809,422 2,673
Staphylococcus aureus MRSA252 Bacilli 2,902,619 2,744
Staphylococcus aureus MSSA476 Bacilli 2,799,802 2,619
Staphylococcus aureus Mu50 Bacilli 2,878,529 2,699
Staphylococcus aureus MW2 Bacilli 2,820,462 2,632
Staphylococcus aureus N315 Bacilli 2,814,816 2,593
Staphylococcus aureus NCTC8325 Bacilli 2,821,361 2,892 Unpublished
Staphylococcus aureus RF122 Bacilli 2,742,531 2,589 Unpublished
Staphylococcus aureus USA300 Bacilli 2,872,769 2,560
Staphylococcus epidermidis ATCC12228 Bacilli 2,499,279 2,419 Unpublished
Staphylococcus epidermidis RP62A Bacilli 2,616,530 2,494
Staphylococcus haemolyticus JCSC1435 Bacilli 2,685,015 2,678
Staphylococcus saprophyticus saprophyticus Bacilli 2,516,575 2,446
Streptococcus agalactiae A909 Bacilli 2,127,839 1,996
Streptococcus agalactiae NEM316 Bacilli 2,211,485 2,134
Streptococcus agalactiae 2603 V/R Bacilli 2,160,267 2,124
Streptococcus mutans UAB159 Bacilli 2,030,921 1,960
Streptococcus pneumoniae R6 Bacilli 2,038,615 2,043
Streptococcus pneumoniae TIGR4 Bacilli 2,160,842 2,125
Streptococcus pyogenes M5Manfredo Bacilli 1,841,271 Unpublished
Streptococcus pyogenes MGAS10270 Bacilli 1,928,252 1,987
Streptococcus pyogenes MGAS10394 Bacilli 1,899,877 1,886
Streptococcus pyogenes MGAS10750 Bacilli 1,937,111 1,979
Streptococcus pyogenes MGAS2096 Bacilli 1,860,355 1,898
Streptococcus pyogenes MGAS315 Bacilli 1,900,521 1,865
Streptococcus pyogenes MGAS5005 Bacilli 1,838,554 1,865
Streptococcus pyogenes MGAS6180 Bacilli 1,897,573 1,894
Streptococcus pyogenes MGAS8232 Bacilli 1,895,017 1,845
Streptococcus pyogenes MGAS9429 Bacilli 1,836,467 1,877
Streptococcus pyogenes SF370 Bacilli 1,852,441 1,696
Streptococcus pyogenes SSI1 Bacilli 1,894,275 1,861
Streptococcus thermophilus CNRZ1066 Bacilli 1,796,226 1,915
Streptococcus thermophilus LMG18311 Bacilli 1,796,846 1,889
Thermoanaerobacter tengcongensis MB4T Clostridia 2,689,445 2,588 Unpublished

Fusobacteriota

Species Strain Type Base Pairs Genes Reference GenBank Identifier
Fusobacterium nucleatum ATCC25586 Fusobacteria 2,174,500 2,067
Fusobacterium sp. 11_3_2 Fusobacteria Unpublished ACUO00000000
Fusobacterium sp. 21_1A Fusobacteria Unpublished ADEE00000000

Gemmatimonadota

Nitrospirota

Planctomycetota

Species Strain Type Base Pairs Genes Reference
Rhodopirellula baltica strain1 Planctomycetes Planctomycetacia 7,145,576 7,325 Unpublished

Pseudomonadota

Alphaproteobacteria

Species Strain Type Base Pairs Genes Reference
Agrobacterium tumefaciens C58 Alphaproteobacteria 2,841,581 2,722
Anaplasma marginale StMaries Alphaproteobacteria 1,197,687 949
Anaplasma phagocytophilum HZ Alphaproteobacteria 1,471,282 1,264
Bartonella henselae Houston-1 Alphaproteobacteria 1,931,047 1,612
Bartonella quintana Toulouse Alphaproteobacteria 1,581,384 1,308
Bradyrhizobium japonicum USDA110 Alphaproteobacteria 9,105,828 8,317
Brucella abortus 2308 (chromosome I) Alphaproteobacteria 1,156,948 1,164
2308 (chromosome II) Alphaproteobacteria 2,121,359 2,186
Brucella abortus 9-941 (chromosome I) Alphaproteobacteria 2,124,241 2,030
9-941 (chromosome II) Alphaproteobacteria 1,162,204 1,055
Brucella melitensis 16M (chromosome I) Alphaproteobacteria 2,117,144 2,059
16M (chromosome II) Alphaproteobacteria 1,177,787 1,139
Brucella suis 1330 (chromosome I) Alphaproteobacteria 2,107,794 2,123
1330 (chromosome II) Alphaproteobacteria 1,207,381 1,150
Caulobacter crescentus CB15 Alphaproteobacteria 4,016,947 3,737
Ehrlichia canis Jake Alphaproteobacteria 1,315,030 925 Unpublished
Ehrlichia chaffeensis Arkansas Alphaproteobacteria 1,176,248 1,105
Ehrlichia ruminantium Gardel Alphaproteobacteria 1,499,920 950 Unpublished
Ehrlichia ruminantium Welgevonden Alphaproteobacteria 1,512,977 958 Unpublished
Unspecified Unspecified Alphaproteobacteria 1,516,355 920
Erythrobacter litoralis HTCC2594 Alphaproteobacteria 3,052,398 3,011 Unpublished
Gluconobacter oxydans 621H Alphaproteobacteria 2,702,173 2,432
Jannaschia species CCS1 Alphaproteobacteria 4,317,977 4,212 Unpublished
Magnetospirillum magneticum AMB1 Alphaproteobacteria 4,967,148 4,559
Mesorhizobium loti MAFF303099 Alphaproteobacteria 7,036,071 6,752
Neorickettsia sennetsu Miyayama Alphaproteobacteria 859,006 932
Nitrobacter hamburgensis X14 Alphaproteobacteria 4,406,967 3,804 Unpublished
Nitrobacter winogradskyi Nb255 Alphaproteobacteria 3,402,093 3,122 Unpublished
Novosphingobium aromaticivorans DSM12444 Alphaproteobacteria 3,561,584 3,324 Unpublished
Pelagibacter ubique HTCC1062 Alphaproteobacteria 1,308,759 1,354
Rhizobium etli CFN42 Alphaproteobacteria 4,381,608 4,067
Rhizobium leguminosarum viciae3841 Alphaproteobacteria 7,751,309 4,746 Unpublished
Rhodobacter sphaeroides 2.4.1 Alphaproteobacteria 3,188,609 3,022 Unpublished
Unspecified Unspecified Alphaproteobacteria 943,016 835 Unpublished
Rhodopseudomonas palustris BisB18 Alphaproteobacteria 5,513,844 4,886 Unpublished
Rhodopseudomonas palustris BisB5 Alphaproteobacteria 4,892,717 4,397 Unpublished
Rhodopseudomonas palustris CGA009 Alphaproteobacteria 5,459,213 4,833
Rhodopseudomonas palustris HaA2 Alphaproteobacteria 5,331,656 4,683 Unpublished
Rhodospirillum rubrum ATCC11170 Alphaproteobacteria 4,352,825 3,791 Unpublished
Rickettsia bellii RML369-C Alphaproteobacteria 1,522,076 1,429 Unpublished
Rickettsia conorii Malish7 Alphaproteobacteria 1,268,755 1,374
Rickettsia felis URRWXCal2 Alphaproteobacteria 1,485,148 1,400
Rickettsia prowazekii Madrid-E Alphaproteobacteria 1,111,523 834
Rickettsia typhi Wilmington Alphaproteobacteria 1,111,496 838
Silicibacter pomeroyi DSS3 Alphaproteobacteria 4,109,442 3,810
Silicibacter species TM1040 Alphaproteobacteria 3,200,938 3,030 Unpublished
Sinorhizobium medicae WSM419 Alphaproteobacteria 3,781,904 3,635
Sinorhizobium meliloti Rm1021 Alphaproteobacteria 3,654,135 3,341
Sphingopyxis alaskensis RB2256 Alphaproteobacteria 3,345,170 3,165 Unpublished
Wolbachia endosymbiont TRS Alphaproteobacteria 1,080,084 805
Wolbachia pipientis wMel Alphaproteobacteria 1,267,782 1,195
Zymomonas mobilis ZM4 Alphaproteobacteria 2,056,416 1,998

Betaproteobacteria

Species Strain Type Base Pairs Genes Reference
Azoarcus sp. EbN1 Betaproteobacteria 4,296,230 4,128 2002
Bordetella bronchiseptica RB50 Betaproteobacteria 5,339,179 5,006 Unpublished
Bordetella parapertussis 12822 Betaproteobacteria 4,773,551 4,402 Unpublished
Bordetella pertussis TohamaI Betaproteobacteria 4,086,189 3,806 Unpublished
Burkholderia cenocepacia AU1054 Betaproteobacteria 3,294,563 2,965 Unpublished
Unspecified Unspecified Betaproteobacteria 2,788,459 2,472 Unpublished
Unspecified Unspecified Betaproteobacteria 1,196,094 1,040 Unpublished
Burkholderia mallei ATCC23344 Betaproteobacteria 3,510,148 2,996 Unpublished
Unspecified Unspecified Betaproteobacteria 2,325,379 2,029 2004
Burkholderia pseudomallei 1710b Betaproteobacteria 4,126,292 3,736 Unpublished
Unspecified Unspecified Betaproteobacteria 3,181,762 2,611 Unpublished
Burkholderia pseudomallei K96243 Betaproteobacteria 4,074,542 (chromosome I)
3,173,005 (chromosome II) 		3,460 (chromosome I)
2,395 (chromosome II) 		2004
Burkholderia species 383 Betaproteobacteria 3,694,126 3,334 Unpublished
Unspecified Unspecified Betaproteobacteria 3,587,082 3,174 Unpublished
Unspecified Unspecified Betaproteobacteria 1,395,069 1,209 Unpublished
Burkholderia thailandensis E264 Betaproteobacteria 3,809,201 3,276 2005
Unspecified Unspecified Betaproteobacteria 2,914,771 2,358 2005
Burkholderia xenovorans LB400 Betaproteobacteria 4,895,836 4,430 Unpublished
Unspecified Unspecified Betaproteobacteria 3,363,523 2,960 Unpublished
Unspecified Unspecified Betaproteobacteria 1,471,779 1,312 Unpublished
Chromobacterium violaceum ATCC12472 Betaproteobacteria 4,751,080 4,407 2003
Dechloromonas aromatica RCB Betaproteobacteria 4,501,104 4,171 Unpublished
Methylobacillus flagellatus KT Betaproteobacteria 2,971,517 2,753 Unpublished
Neisseria gonorrhoeae FA1090 Betaproteobacteria 2,153,922 2,002 Unpublished
Neisseria meningitidis serogroup A strain Z2491 Betaproteobacteria 2,184,406 2,121 2000
Neisseria meningitidis serogroup B strain MC58 Betaproteobacteria 2,272,360 2,063 2000
Nitrosomonas europaea Schmidt Betaproteobacteria 2,812,094 2,574 2003
Nitrosospira multiformis ATCC25196 Betaproteobacteria 3,184,243 2,757 Unpublished
Polaromonas species JS666 Betaproteobacteria 5,200,264 4,817 Unpublished
Ralstonia eutropha JMP134 Betaproteobacteria 3,806,533 3,439 Unpublished
Unspecified Unspecified Betaproteobacteria 2,726,152 2,407 Unpublished
Ralstonia metallidurans CH34 Betaproteobacteria 3,928,089 3,601 Unpublished
Unspecified Unspecified Betaproteobacteria 2,580,084 2,313 Unpublished
Ralstonia solanacearum GMI1000 Betaproteobacteria 3,716,413 3,441 2002
Unspecified Unspecified Betaproteobacteria 2,094,509 1,679
Rhodoferax ferrireducens DSM15236 Betaproteobacteria 4,712,337 4,170 Unpublished
Thiobacillus denitrificans ATCC25259 Betaproteobacteria 2,909,809 2,827 Unpublished

Gammaproteobacteria

Species Strain Type Base Pairs Genes Reference
Acinetobacter sp. ADP1 Gammaproteobacteria 3,598,621 3,325 2004
Baumannia cicadellinicola Hc Gammaproteobacteria 686,194 595 Unpublished
Blochmannia floridanus Strain Gammaproteobacteria 705,557 589 2003
Blochmannia pennsylvanicus bpEN Gammaproteobacteria 791,654 610 2005
Buchnera aphidicola APS Gammaproteobacteria 640,681 564 2000
Buchnera aphidicola B Gammaproteobacteria 615,980 504 2003
Buchnera aphidicola Sg Gammaproteobacteria 641,454 545 2002
Carsonella ruddii PV Gammaproteobacteria 159,662 182 2006
Chromohalobacter salexigens DSM3043 Gammaproteobacteria 3,696,649 3,298 Unpublished
Colwellia psychrerythraea 34H Gammaproteobacteria 5,373,180 4,910 Unpublished
Coxiella burnetii RSA493 Gammaproteobacteria 1,995,281 2,016 2003
Erwinia carotovora SCRI1043 Gammaproteobacteria 5,064,019 4,492 Unpublished
Escherichia coli 536 Gammaproteobacteria 4,938,920 4,685 Unpublished
Escherichia coli CFT073 Gammaproteobacteria 5,231,428 5,379 2002
Escherichia coli K-12 Gammaproteobacteria 4,639,675 (4,646,332) 4,331 (4,337) 1997, 2005
Escherichia coli O157:H7 Gammaproteobacteria 5,528,445 (5,498,450) 5,349 (5,361) 2001, 1999
Escherichia coli UTI89 Gammaproteobacteria 5,065,741 5,066 Unpublished
Francisella tularensis LVS Gammaproteobacteria 1,895,994 1,967 Unpublished
Francisella tularensis SCHUS4 Gammaproteobacteria 1,892,819 1,804 2005
Haemophilus ducreyi 3500HP Gammaproteobacteria 1,698,955 1,717 Unpublished
Haemophilus influenzae 86-028NP Gammaproteobacteria 1,913,428 1,792 2005
Haemophilus influenzae Rd Gammaproteobacteria 1,830,138 1,709 1995
Hahella chejuensis KCTC2396 Gammaproteobacteria 7,215,267 6,782 2005
Idiomarina loihiensis L2TR Gammaproteobacteria 2,839,318 2,628 2004
Legionella pneumophila Lens Gammaproteobacteria 3,345,687 2,947 2004
Legionella pneumophila Paris Gammaproteobacteria 3,503,610 3,082 2004
Legionella pneumophila Philadelphia1 Gammaproteobacteria 3,397,754 2,942 Unpublished
Mannheimia succiniciproducens MBEL55E Gammaproteobacteria 2,314,078 2,384 Unpublished
Methylococcus capsulatus Bath Gammaproteobacteria 3,304,561 2,960 2004
Nitrosococcus oceani ATCC19707 Gammaproteobacteria 3,481,691 2,976 Unpublished
Pasteurella multocida Pm70 Gammaproteobacteria 2,257,487 2,014 2001
Photobacterium profundum SS9 Gammaproteobacteria 4,085,304 3,416 Unpublished
Unspecified Unspecified Gammaproteobacteria 2,237,943 1,997 Unpublished
Photorhabdus luminescens laumondiiTTO1 Gammaproteobacteria 5,688,987 4,905 Unpublished
Pseudoalteromonas haloplanktis TAC125 Gammaproteobacteria 3,214,944 2,941 2005
Unspecified Unspecified Gammaproteobacteria 635,328 546
Pseudomonas aeruginosa VRFPA04 Gammaproteobacteria 6,818,030 5,939 2016
Pseudomonas entomophila L48 Gammaproteobacteria 5,888,780 5,168 Unpublished
Pseudomonas fluorescens Pf-5 Gammaproteobacteria 7,074,893 6,137 2005
Pseudomonas fluorescens PfO-1 Gammaproteobacteria 6,438,405 5,736 Unpublished
Pseudomonas putida KT2440 Gammaproteobacteria 6,181,863 5,350 2002
Pseudomonas syringae B728a Gammaproteobacteria 6,093,698 5,136 2005
Pseudomonas syringae DC3000 Gammaproteobacteria 6,397,126 5,470 2003
Pseudomonas syringae phaseolicola1448A Gammaproteobacteria 5,928,787 4,983 Unpublished
Psychrobacter arcticum 273-4 Gammaproteobacteria 2,650,701 2,147 Unpublished
Psychrobacter cryohalolentis K5 Gammaproteobacteria ~3.1Mb 2,575
Unspecified Unspecified Gammaproteobacteria 3,059,876 2,467 Unpublished
Saccharophagus degradans Feb-40 Gammaproteobacteria 5,057,531 4,008 Unpublished
Salmonella enterica ATCC9150 Gammaproteobacteria 4,585,229 4,093 2004
Salmonella enterica SCB67 Gammaproteobacteria 4,755,700 4,445 2005
Salmonella enterica Ty2 Gammaproteobacteria 4,791,961 4,323 2003
Salmonella enterica typhiCT18 Gammaproteobacteria 4,809,037 4,600 2001
Salmonella typhimurium LT2 Gammaproteobacteria 4,857,432 4,452 2001
Shewanella denitrificans OS217 Gammaproteobacteria 4,545,906 3,754 Unpublished
Shewanella oneidensis MR1 Gammaproteobacteria 4,969,803 4,630 2002
Shigella boydii Sb227 Gammaproteobacteria 4,519,823 4,142 2005
Shigella dysenteriae Sd197 Gammaproteobacteria 4,369,232 4,277 2005
Shigella flexneri 2457T Gammaproteobacteria 4,599,354 4,073 2003
Shigella flexneri 2a301 Gammaproteobacteria 4,607,203 4,436 2002
Shigella sonnei Ss046 Gammaproteobacteria 4,825,265 4,224 2005
Sodalis glossinidius morsitans Gammaproteobacteria 4,171,146 2,432 2006
Thiomicrospira crunogena XCL2 Gammaproteobacteria 2,427,734 2,192 Unpublished
Vibrio cholerae N16961 Gammaproteobacteria 2,961,149 (chromosome I)
1,072,315 (chromosome II) 		2,736 (chromosome I)
1,092 (chromosome II) 		2000
Vibrio fischeri ES114 Gammaproteobacteria 2,906,179 (chromosome I)
1,332,022 (chromosome II) 		2,575 (chromosome I)
1,172 (chromosome II) 		2005
Vibrio parahaemolyticus RIMD2210633 Gammaproteobacteria 3,288,558 (chromosome I)
1,877,212 (chromosome II) 		3,080 (chromosome I)
1,752 (chromosome II) 		2000
Vibrio vulnificus CMCP6 Gammaproteobacteria 3,281,944 (chromosome I)
1,844,853 (chromosome II) 		2,973 (chromosome I)
1,565 (chromosome II) 		2003
Vibrio vulnificus YJ016 Gammaproteobacteria 3,354,505 (chromosome I)
1,857,073 (chromosome II) 		3,262 (chromosome I)
1,697 (chromosome II) 		2003
Wigglesworthia glossinidia Strain Gammaproteobacteria 697,724 611 2002
Xanthomonas axonopodis citri306 Gammaproteobacteria 5,175,554 4,312 2002
Xanthomonas campestris 8004 Gammaproteobacteria 5,148,708 4,273 2005
Xanthomonas campestris 8510 Gammaproteobacteria 5,178,466 4,487 2005
Xanthomonas campestris ATCC33913 Gammaproteobacteria 5,076,188 4,181 2002
Xanthomonas oryzae KACC10331 Gammaproteobacteria 4,941,439 4,637 2005
Xanthomonas oryzae MAFF311018 Gammaproteobacteria 4,940,217 4,372 Unpublished
Xylella fastidiosa 9a5c Gammaproteobacteria 2,679,306 2,766 2000
Xylella fastidiosa Temecula1 Gammaproteobacteria 2,519,802 2,034 2003
Yersinia pestis Antiqua Gammaproteobacteria 4,702,289 4,167 2006
Yersinia pestis CO-92BiovarOrientalis Gammaproteobacteria 4,653,728 4,008 2001
Yersinia pestis KIM Gammaproteobacteria 4,600,755 4,090 2002
Yersinia pestis Mediaevalis Gammaproteobacteria 4,595,065 3,895 2004
Yersinia pseudotuberculosis IP32953 Gammaproteobacteria 4,744,671 3,974 2004

Zetaproteobacteria

Myxococcota–Campylobacterota

Species Strain Type Base Pairs Genes Reference
Anaeromyxobacter dehalogenans 2CP-C delta-epsilon 5,013,479 4,346 Unpublished
Bdellovibrio bacteriovorus HD100 delta-epsilon 3,782,950 3,583 2004
Campylobacter jejuni NCTC11168 delta-epsilon 1,641,481 1,643 2000
Campylobacter jejuni RM1221 delta-epsilon 1,777,831 1,838 2005
Desulfotalea psychrophila LSv54 delta-epsilon 3,523,383 3,118 Unpublished
Desulfovibrio desulfuricans G20 delta-epsilon 3,730,232 3,775 Unpublished
Desulfovibrio vulgaris Hildenborough delta-epsilon 3,570,858 3,379 2004
Geobacter metallireducens GS15 delta-epsilon 3,997,420 3,519 Unpublished
Geobacter sulfurreducens PCA delta-epsilon 3,814,139 3,447 2003
Helicobacter hepaticus ATCC51449 delta-epsilon 1,799,146 1,875 2003
Helicobacter pylori 26695 delta-epsilon 1,667,867 1,566 1997
Helicobacter pylori HPAG1 delta-epsilon 1,596,366 1,536 Unpublished
Helicobacter pylori J99 delta-epsilon 1,643,831 1,491 1999
Lawsonia intracellularis PHEMN1-00 delta-epsilon 1,719,014 1,344 Unpublished
Lawsonia intracellularis PHE/MN1-00 delta-epsilon 1,457,619 (chromosome)
27,048 (plasmid A)
39,794 (plasmid B)
194,553 (plasmid C) 		1,187
29 (plasmid A)
24 (plasmid B)
104 (plasmid C) 		2013
Myxococcus xanthus DK1622 delta-epsilon 9,139,763 7,331 Unpublished
Pelobacter carbinolicus DSM2380 delta-epsilon 3,665,893 3,119 Unpublished
Sorangium cellulosum So ce56 delta-epsilon 13,033,779 9,367 2007
Sulfurimonas denitrificans DSM1251 delta-epsilon 2,201,561 2,104 2007
Syntrophus aciditrophicus SB delta-epsilon 3,179,300 3,168 Unpublished
Thiomicrospira denitrificans ATCC33889 delta-epsilon 2,201,561 2,097 Unpublished
Wolinella succino DSMZ1740 delta-epsilon 2,110,355 2,044 2003

Spirochaetota

Species Strain Type Base Pairs Genes Reference
Borrelia burgdorferi B31 Spirochaetota 910,724 850
Borrelia garinii PBi Spirochaetota 904,246 832
Leptospira interrogans 56601 Spirochaetota 4,332,241 4,358
Unspecified Unspecified Spirochaetota 358,943 367
Leptospira interrogans FiocruzL1130 Spirochaetota 4,277,185 3,394
Unspecified Unspecified Spirochaetota 350,181 264
Treponema denticola ATCC35405 Spirochaetota 2,843,201 2,767
Treponema pallidum Nichols Spirochaetota 1,138,011 1,031

Synergistota

Species Strain Type Base Pairs Genes Reference GenBank Identifier
Thermovirga lienii Cas60314, DSM 17291 Synergistia 1,967,774 DOE Joint Genome Institute CP003096

Mycoplasmatota

Species Strain Type Base Pairs Genes Reference GenBank Identifier
Mesoplasma florum L1 Mollicutes 793,224 683 Unpublished
Mycoplasma anatis 1340, ATCC 25524 Mollicutes AFVJ00000000
Mycoplasma capricolum ATCC273 Mollicutes 1,010,023 812 Unpublished
Mycoplasma gallisepticum R Mollicutes 996,422 726
Mycoplasma genitalium G37 Mollicutes 580,076 476
Mycoplasma haemocanis Illinois Mollicutes 919,992 Unpublished CP003199
Mycoplasma hyopneumoniae 232 Mollicutes 892,758 691
Mycoplasma hyopneumoniae 7448 Mollicutes 920,079 663
Mycoplasma hyopneumoniae J Mollicutes 897,405 665
Mycoplasma hyorhinis GDL-1 Mollicutes 837,480 Unpublished CP003231
Mycoplasma leachii 99/014/6 Mollicutes 1,017,232 Unpublished FR668087
Mycoplasma mobile 163K Mollicutes 777,079 635
Mycoplasma mycoides SC Mollicutes 1,211,703 1,016
Mycoplasma penetrans HF2 Mollicutes 1,358,633 1,037
Mycoplasma pneumoniae M129 Mollicutes 816,394 688
Mycoplasma pulmonis UAB Mollicutes 963,879 782
Mycoplasma synoviae 53 Mollicutes 799,476 672
Phytoplas maasteris AYWB Mollicutes 706,569 671 Unpublished
Phytoplas maasteris OY Mollicutes 860,631 754
Ureaplasma urealyticum serovar3 Mollicutes 751,719 611

Thermodesulfobacteriota

Species Strain Type Base Pairs Genes Reference
Thermodesulfatator indicus CIR29812(T) Thermodesulfobacteriota 2,322,224 2,291 2012
Thermodesulfobacterium geofontis OPF15(T) Thermodesulfobacteriota 1,634,377 1,635 2013

Thermotogota

Species Strain Type Base Pairs Genes Reference
Fervidobacterium nodosum Rt17-B1 Thermotogota 1,950,000 1,750 2009
Kosmotoga olearia TBF 19.5.1 Thermotogota 2,302,126 2,118 2011
Mesotoga prima MesG1.Ag.4.2 Thermotogota 2,974,229 chromosome
1,724 plasmid 		2,736 2012
Thermosipho africanus TCF52B Thermotogota 2,016,657 2,000 2009
Thermosipho melanesiensis BI429 Thermotogota 1,920,000 1,879 2009
Thermotoga lettingae TMO Thermotogota 2,140,000 2,040 2009
Thermotoga maritima MSB8 Thermotogota 1,860,725 1,846 1999, 2013
Thermotoga petrophila RKU-1 Thermotogota 1,820,000 1,785 2009

See also

External links

  • BacMap — an up-to-date electronic atlas of annotated bacterial genomes
  • SUPERFAMILY comparative genomics database Includes genomes of completely sequenced prokaryotes, and sophisticated datamining plus visualisation tools for analysis

Новое сообщение